Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LUAD rs11231240 chr11:62597198 T/C 2.27E-5 505 21.93 21.73 7.7 KM Plot
LUAD rs11231249 chr11:62613854 C/G 2.72E-5 505 7.7 21.75 21.93 KM Plot
LUAD rs11231252 chr11:62624771 G/A 2.46E-5 504 21.73 23.03 7.7 KM Plot
LUAD rs11239402 chr10:45747764 C/T 3.1E-7 493 22.13 22.57 10.95 KM Plot
LUAD rs112882725 chr17:47476340 T/TTC 2.12E-6 498 21.82 18 3.97 KM Plot
LUAD rs113056032 chr17:47384974 C/T 3.59E-11 500 21.77 21.93 4.55 KM Plot
LUAD rs113367969 chr17:47476041 A/AT 2.11E-6 498 21.82 18 3.97 KM Plot
LUAD rs113389281 chr17:45823386 A/AT 8.92E-7 503 21.9 20.87 3.97 KM Plot
LUAD rs113417173 chr4:132497181 GAGA/G 2.71E-5 494 21.73 22.57 7 KM Plot
LUAD rs113719235 chr2:132274370 C/T 2.47E-6 504 21.73 23.75 11.87 KM Plot
LUAD rs11650001 chr17:47456754 A/G 3.37E-7 503 21.87 21.7 4.63 KM Plot
LUAD rs11650087 chr17:47362923 T/A 6.93E-11 500 21.93 21 4.55 KM Plot
LUAD rs11650886 chr17:47449193 G/A 6.72E-11 499 21.9 19.15 4.55 KM Plot
LUAD rs11651191 chr17:47378937 G/A 5.65E-11 502 21.93 20.3 4.55 KM Plot
LUAD rs11653686 chr17:47362991 C/T 4.99E-11 497 21.87 22.13 4.55 KM Plot